Prepare datasets for interactive forest plot
Usage
prepare_ae_forestly(
meta,
population = NULL,
observation = NULL,
parameter = NULL,
components = "par",
reference_group = NULL,
ae_listing_display = c("USUBJID", "SITEID", "SEX", "RACE", "AGE", "ASTDY", "AESER",
"AEREL", "AEACN", "AEOUT", "ADURN", "ADURU"),
ae_listing_unique = FALSE
)Arguments
- meta
A metadata object created by metalite.
- population
A character value of population term name. The term name is used as key to link information.
- observation
A character value of observation term name. The term name is used as key to link information.
- parameter
A character value of parameter term name. The term name is used as key to link information.
- components
A character vector of components name.
- reference_group
An integer to indicate reference group. Default is 2 if there are 2 groups, otherwise, the default is 1.
- ae_listing_display
A vector of name of variables used to display on AE listing table.
- ae_listing_unique
A logical value to display only unique records on AE listing table.
Examples
adsl <- forestly_adsl[1:100,]
adae <- forestly_adae[1:100,]
meta_forestly(
dataset_adsl = adsl,
dataset_adae = adae
) |>
prepare_ae_forestly()
#> Warning: In observation level data, force group variable 'TRTA' be a factor
#> Warning: In observation level data, force group variable 'TRTA' be a factor
#> List of 18
#> $ meta :List of 7
#> $ population : chr "apat"
#> $ observation : chr "safety"
#> $ parameter : chr "any;rel"
#> $ n :'data.frame': 60 obs. of 3 variables:
#> $ order : num [1:60] 1008 1009 2019 2021 2022 ...
#> $ group : chr [1:3] "Placebo" "Xanomeline Low Dose" "Total"
#> $ reference_group: num 2
#> $ parameter_order: Factor w/ 2 levels "any","rel": 1 1 1 1 1 1 1 1 1 1 ...
#> $ prop :'data.frame': 60 obs. of 3 variables:
#> $ diff :'data.frame': 60 obs. of 1 variable:
#> $ n_pop :'data.frame': 1 obs. of 3 variables:
#> $ name : chr [1:60] "Atrioventricular block second degree" "Bundle branch block left" "Eye allergy" "Eye pruritus" ...
#> $ soc_name : chr [1:60] "CARDIAC DISORDERS" "CARDIAC DISORDERS" "EYE DISORDERS" "EYE DISORDERS" ...
#> $ ci_lower :'data.frame': 60 obs. of 1 variable:
#> $ ci_upper :'data.frame': 60 obs. of 1 variable:
#> $ p :'data.frame': 60 obs. of 1 variable:
#> $ ae_listing :'data.frame': 151 obs. of 15 variables: